Package: MetAlyzer 1.0.0

MetAlyzer: Read and Analyze 'MetIDQ™' Software Output Files

The 'MetAlyzer' S4 object provides methods to read and reformat metabolomics data for convenient data handling, statistics and downstream analysis. The resulting format corresponds to input data of the Shiny app 'MetaboExtract' (<https://www.metaboextract.shiny.dkfz.de/MetaboExtract/>).

Authors:Nils Mechtel [aut, cre], Luis Herfurth [aut], Carolin Andresen [aut], Daniel Huebschmann [aut]

MetAlyzer_1.0.0.tar.gz
MetAlyzer_1.0.0.zip(r-4.5)MetAlyzer_1.0.0.zip(r-4.4)MetAlyzer_1.0.0.zip(r-4.3)
MetAlyzer_1.0.0.tgz(r-4.4-any)MetAlyzer_1.0.0.tgz(r-4.3-any)
MetAlyzer_1.0.0.tar.gz(r-4.5-noble)MetAlyzer_1.0.0.tar.gz(r-4.4-noble)
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MetAlyzer.pdf |MetAlyzer.html✨
MetAlyzer/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/nilsmechtel/metalyzer/issues

On CRAN:

24 exports 3 stars 1.92 score 98 dependencies 4 scripts 337 downloads

Last updated 4 months agofrom:f7bbf475c3. Checks:OK: 7. Indexed: yes.

Exports:aggregatedDatacalculate_anovacalculate_cvcalculate_log2FCexample_extraction_dataexample_meta_dataexample_mutation_data_xlexportConcValuesfilterMetabolitesfilterMetaDatalog2FCmetalyzer_colorsMetAlyzer_datasetpathwayplot_log2FCplot_networkplotly_networkplotly_scatterplotly_vulcanopolarityrenameMetaDatasummarizeConcValuessummarizeQuantDataupdateMetaData

Dependencies:abindagricolaeAlgDesignaskpassbase64encBiobaseBiocGenericsbslibcachemcliclustercolorspacecpp11crayoncrosstalkcurldata.tableDelayedArraydigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegridExtragtablehighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslopenxlsxpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS4ArraysS4VectorssassscalesSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisviridisLitewithrxfunXVectoryamlzipzlibbioc